PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929825.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 460aa    MW: 50200.5 Da    PI: 8.4165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929825.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-095177127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C++G +CkF+H+p
  XP_010929825.1 51 PGEADCGYYIRTGLCRFGMTCKFNHPP 77
                    57899********************97 PP

2zf-CCCH39.11.2e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_010929825.1  98 QPECQYYLKTGTCKFGATCKFHHPK 122
                     799********************96 PP

3zf-CCCH33.47.4e-11144168327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++ rtG+Ck+G++CkF+H++
  XP_010929825.1 144 EKECAYYIRTGQCKFGNTCKFHHPQ 168
                     679********************97 PP

4zf-CCCH39.21.2e-12304329227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  XP_010929825.1 304 DQPECQFYMKTGDCKFGAVCKFHHPR 329
                     689*********************96 PP

5zf-CCCH382.9e-12349375127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010929825.1 349 PGEPLCVFYSRYGICKFGPNCKFDHPM 375
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7655078IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165077IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-65277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-55478IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33895123IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4101121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-6141169IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-4141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953141169IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-8144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53302330IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6305332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5308330IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953348376IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6351376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4353373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEYEGTGVQM HGVRPPAAMT EGSSSLDEEA MWQMNLRGSE SMESGPYPER PGEADCGYYI  60
RTGLCRFGMT CKFNHPPNRR LAIAAARIKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH  120
PKDKAGIAGR VQLNILGYPL RPNEKECAYY IRTGQCKFGN TCKFHHPQPS NAMVALRGSP  180
VYPPVHSSTT PGQQSYPGGL TNWSLSRTSF IPSPRWQDPS SYTQLILPQG LVQVPGWNPY  240
PGQMGSSSPD SQQQTPGAAQ YYSTTHQSET SAGAQGTFSS YRPGSIPMGV YALQRENIFP  300
ERPDQPECQF YMKTGDCKFG AVCKFHHPRE RLVPVPNCLL SPLGLPLRPG EPLCVFYSRY  360
GICKFGPNCK FDHPMGTFTY GISTSSTADV PTVRRLIGSS SGPPALTSSS EGPADAGMGK  420
PRDSRRLSLS ESRQIGTGDE NLEAEASHTS SSIGQVSSFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929825.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW1PQQ60.0W1PQQ6_AMBTC; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-161zinc finger protein 1